Correlated Mutation Analysis

Residue-Residue Coevolution Network (RRCN)

B-C. Lee, K. Park, D. Kim, “Analysis of the residue-residue coevolution network and the functionally important residues in proteins”, Proteins, 72(3):863-872 (2008) Full Text

Reduction of normalised coevolutionary pattern similarity (NCPS) scores: CMc and aMIc method

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ImpoHis

Reference

Inkyung Jung and Dongsup Kim. (2010) The effect of histone modifications on gene regulation differs according to biological function, in submission


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PostMod

Reference

Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, and Dongsup Kim. (2010) PostMod: Sequence-based prediction of phosphorylation sites by considering indirect relationships, BMC bioinformatics Full Text


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Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe

Supplementary page 

Kim DU, Hayles J, Kim D, Wood V, Park HO, Won M, Yoo HS, Duhig T, Nam M, Palmer G, Han S, Jeffery L, Baek ST, Lee H, Shim YS, Lee M, Kim L, Heo KS, Noh EJ, Lee AR, Jang YJ, Chung KS, Choi SJ, Park JY, Park Y, Kim HM, Park SK, Park HJ, Kang EJ, Kim HB, Kang HS, Park HM, Kim K, Song K, Song KB, Nurse P, Hoe KL., “Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe”, Nat Biotech, 28(6):617-23 (2010) Full Text


Reduction of normalised coevolutionary pattern similarity (NCPS) scores: CMc and aMIc method

Data Download Link

  LibBP: Library of Binding Protein

Reference

Seungpyo Hong, and Dongsup Kim. "Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds." Bioinformatics (2016) Full Text

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  KRDS: Kinase Resistance Docking System

Reference

A, and Dongsup Kim. "Kinase Resistance Docking System" in submission 

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  RF-QSAR: Random Forest based target fishing server

Reference

Kyoungyeul Lee, Minho Lee, and Dongsup Kim. "Utilizing Random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server ", BMC bioinformatics,  accepted 

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  3DIV: A 3D-genome Interaction Viewer and database

Reference

Dongchan Yang, Insu Jang, Jinhyuk Choi, Min-Seo Kim, Andrew J. Lee, Hyunwoong Kim, Junghyun Eom, Dongsup Kim, Inkyung Jung, and Byungwook Lee. "3DIV: A 3D-genome Interaction Viewer and database", Nucleic Acids Research  Full Text


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